{
  "_id": "6a1f11dab401979e7341db6c",
  "Package": "PoissonPCA",
  "Title": "Poisson-Noise Corrected PCA",
  "Version": "1.0.3",
  "Authors@R": "c(person(\"Toby\", \"Kenney\", email = \"tkenney@mathstat.dal.ca\", role = c(\"aut\", \"cre\")),person(\"Tianshu\", \"Huang\", email = \"\", role = c(\"aut\")))",
  "Description": "For a multivariate dataset with independent Poisson\nmeasurement error, calculates principal components of\ntransformed latent Poisson means. T. Kenney, T. Huang, H. Gu\n(2019) <arXiv:1904.11745>.",
  "License": "GPL-3",
  "Encoding": "UTF-8",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-05-17 07:45:17 UTC",
    "User": "root"
  },
  "Author": "Toby Kenney [aut, cre], Tianshu Huang [aut]",
  "Maintainer": "Toby Kenney <tkenney@mathstat.dal.ca>",
  "Repository": "https://tjk23.r-universe.dev",
  "Date/Publication": "2021-08-17 14:20:02 UTC",
  "RemoteUrl": "https://github.com/cran/PoissonPCA",
  "RemoteRef": "HEAD",
  "RemoteSha": "dfdf36ffabdda4ef2469c53a4b9ce1d44f0e5817",
  "MD5sum": "d7c73a63d0848dd55da57fe857bb7907",
  "_user": "tjk23",
  "_type": "src",
  "_file": "PoissonPCA_1.0.3.tar.gz",
  "_fileid": "31d96ed7d4cad6d67f5ef4210f9ce67cfec8e6a508b88af8f4659c40bf396a66",
  "_filesize": 178064,
  "_sha256": "31d96ed7d4cad6d67f5ef4210f9ce67cfec8e6a508b88af8f4659c40bf396a66",
  "_created": "2026-05-17T07:45:17.000Z",
  "_published": "2026-06-02T17:24:42.663Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 79131323557,
      "time": 127,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7040546583"
    },
    {
      "job": 79131323246,
      "time": 99,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7040543747"
    },
    {
      "job": 79131324026,
      "time": 100,
      "config": "linux-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7040543811"
    },
    {
      "job": 79131323686,
      "time": 109,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7040544634"
    },
    {
      "job": 79131323678,
      "time": 70,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7040540798"
    },
    {
      "job": 79131323663,
      "time": 122,
      "config": "macos-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7040545866"
    },
    {
      "job": 79131323402,
      "time": 92,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7040542989"
    },
    {
      "job": 79131323361,
      "time": 303,
      "config": "macos-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7040564342"
    },
    {
      "job": 79131322453,
      "time": 249,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7040533472"
    },
    {
      "job": 79131322536,
      "time": 83,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7365018890"
    },
    {
      "job": 79131323284,
      "time": 101,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7040543838"
    },
    {
      "job": 79131323740,
      "time": 67,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7040540739"
    },
    {
      "job": 79131323443,
      "time": 67,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7040540653"
    }
  ],
  "_buildurl": "https://github.com/r-universe/tjk23/actions/runs/25984869385",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/cran/PoissonPCA",
  "_commit": {
    "id": "dfdf36ffabdda4ef2469c53a4b9ce1d44f0e5817",
    "author": "Toby Kenney <tkenney@mathstat.dal.ca>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 1.0.3\n",
    "time": 1629210002
  },
  "_maintainer": {
    "name": "Toby Kenney",
    "email": "tkenney@mathstat.dal.ca",
    "login": "tjk23",
    "description": "",
    "uuid": 43670129
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.2.3",
      "role": "Depends"
    }
  ],
  "_owner": "cran",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 0,
  "_contributors": [
    {
      "user": "tjk23",
      "count": 2,
      "uuid": 43670129
    }
  ],
  "_userbio": {
    "uuid": 43670129,
    "type": "user",
    "name": "tjk23"
  },
  "_downloads": {
    "count": 715,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/PoissonPCA"
  },
  "_searchresults": 9,
  "_topics": [
    "cpp"
  ],
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/PoissonPCA.html",
    "manual.pdf"
  ],
  "_realowner": "tjk23",
  "_cranurl": false,
  "_releases": [
    {
      "version": "1.0.2",
      "date": "2019-05-01"
    },
    {
      "version": "1.0.3",
      "date": "2021-08-17"
    }
  ],
  "_exports": [
    "get_scores",
    "get_scores_log",
    "LinearCorrectedVariance",
    "LinearCorrectedVarianceSeqDepth",
    "make_compositional_min_var",
    "make_compositional_variance",
    "makelogtransformation",
    "Poisson_Corrected_PCA",
    "polynomial_transformation",
    "TransformedVariance",
    "TransformedVarianceECV"
  ],
  "_help": [
    {
      "page": "get_scores",
      "title": "Calculates principal scores for Poisson-noise corrected PCA",
      "topics": [
        "get_scores",
        "get_scores_log"
      ]
    },
    {
      "page": "LinearCorrectedVariance",
      "title": "Estimates variance of a transformation of latent Poisson means",
      "topics": [
        "LinearCorrectedVariance",
        "LinearCorrectedVarianceSeqDepth",
        "TransformedVariance",
        "TransformedVarianceECV"
      ]
    },
    {
      "page": "make_compositional_variance",
      "title": "Converts a covariance matrix to compositional form",
      "topics": [
        "make_compositional_min_var",
        "make_compositional_variance"
      ]
    },
    {
      "page": "makelogtransformation",
      "title": "constructs a log transformation for use with functions from the PoissoncorrectedPCA package.",
      "topics": [
        "makelogtransformation"
      ]
    },
    {
      "page": "Poisson_Corrected_PCA",
      "title": "PCA with Poisson measurement error",
      "topics": [
        "Poisson_Corrected_PCA"
      ]
    },
    {
      "page": "polynomial_transformation",
      "title": "constructs a polynomial transformation for use with functions from the PoissoncorrectedPCA package.",
      "topics": [
        "polynomial_transformation"
      ]
    }
  ],
  "_rundeps": [],
  "_sysdeps": [
    {
      "shlib": "libstdc++",
      "package": "libstdc++6",
      "source": "gcc",
      "version": "14.2.0-4ubuntu2~24.04.1",
      "name": "c++",
      "homepage": "http://gcc.gnu.org/",
      "description": "GNU Standard C++ Library v3"
    }
  ],
  "_vignettes": [
    {
      "source": "PoissonPCA.Rnw",
      "filename": "PoissonPCA.pdf",
      "title": "totalcovariance",
      "engine": "utils::Sweave",
      "headings": [],
      "created": "2019-05-01 08:00:03",
      "modified": "2019-05-01 08:00:03",
      "commits": 1
    }
  ],
  "_score": 2,
  "_indexed": true,
  "_nocasepkg": "poissonpca",
  "_universes": [
    "tjk23"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.0.3",
      "date": "2026-05-17T07:47:31.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "dfdf36ffabdda4ef2469c53a4b9ce1d44f0e5817",
      "fileid": "6bbb68e87f7f5741b536987265ae4de8d7fb86c16a1c7ab8a48c6c3995e8f909",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/tjk23/actions/runs/25984869385"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.0.3",
      "date": "2026-05-17T07:47:01.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "dfdf36ffabdda4ef2469c53a4b9ce1d44f0e5817",
      "fileid": "b641c3f98bcc700f051911665f313f2ca112905585624a81f254269e333f47a0",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/tjk23/actions/runs/25984869385"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.0.3",
      "date": "2026-05-17T07:47:06.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "dfdf36ffabdda4ef2469c53a4b9ce1d44f0e5817",
      "fileid": "addc66a06b9c077ec36078f22a8a63d0e83b5570d98cdfe546ea011841b993c2",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/tjk23/actions/runs/25984869385"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.0.3",
      "date": "2026-05-17T07:47:10.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "dfdf36ffabdda4ef2469c53a4b9ce1d44f0e5817",
      "fileid": "bcf10c7adf268873e5fad38e316d7e2c5b180bbb9c448011cbdd215fcb5ccd71",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/tjk23/actions/runs/25984869385"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.0.3",
      "date": "2026-05-17T07:46:34.000Z",
      "arch": "aarch64",
      "commit": "dfdf36ffabdda4ef2469c53a4b9ce1d44f0e5817",
      "fileid": "fe6b8a36db88d506ce76a72b80bee11bd113ecb1363297cd11a6578203a531c4",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/tjk23/actions/runs/25984869385"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.0.3",
      "date": "2026-05-17T07:47:17.000Z",
      "arch": "x86_64",
      "commit": "dfdf36ffabdda4ef2469c53a4b9ce1d44f0e5817",
      "fileid": "9e9d9a94cbd7bd3452d2548ebd83daf1b51b3755b1ee9baa4a7da7158fd64a6e",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/tjk23/actions/runs/25984869385"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.0.3",
      "date": "2026-05-17T07:46:52.000Z",
      "arch": "aarch64",
      "commit": "dfdf36ffabdda4ef2469c53a4b9ce1d44f0e5817",
      "fileid": "148dee40b1e2699cb5126ddc6e4b26bf596b90cebbdaf1e353706d240664ba8f",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/tjk23/actions/runs/25984869385"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.0.3",
      "date": "2026-05-17T07:49:47.000Z",
      "arch": "x86_64",
      "commit": "dfdf36ffabdda4ef2469c53a4b9ce1d44f0e5817",
      "fileid": "eaa47360c68f6a619e1f3331816c4b1cd13659c3c0e2eeb101ffc0a612665bae",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/tjk23/actions/runs/25984869385"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.0.3",
      "date": "2026-05-17T07:46:51.000Z",
      "arch": "x86_64",
      "commit": "dfdf36ffabdda4ef2469c53a4b9ce1d44f0e5817",
      "fileid": "a44e6ef1d2f3d49542838bcf98472b951862044bddd22b2ce674239ba9f4e82a",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/tjk23/actions/runs/25984869385"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.0.3",
      "date": "2026-05-17T07:46:22.000Z",
      "arch": "x86_64",
      "commit": "dfdf36ffabdda4ef2469c53a4b9ce1d44f0e5817",
      "fileid": "12ba2c40408069c4eb05bd41b7f2281117c26cd898bb7ab12da12105731cad43",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/tjk23/actions/runs/25984869385"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.0.3",
      "date": "2026-05-17T07:46:17.000Z",
      "arch": "x86_64",
      "commit": "dfdf36ffabdda4ef2469c53a4b9ce1d44f0e5817",
      "fileid": "99cd67d063c50a9e8c6568040dfa5c9e244cc1ee56de93956eaf268b62a4354f",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/tjk23/actions/runs/25984869385"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.0.3",
      "date": "2026-06-02T17:24:26.000Z",
      "arch": "emscripten",
      "commit": "dfdf36ffabdda4ef2469c53a4b9ce1d44f0e5817",
      "fileid": "afa15416f3e430e8431a6ebdd0432dd274e06edc15331ce5ce6f17cfe9279aa9",
      "status": "success",
      "buildurl": "https://github.com/r-universe/tjk23/actions/runs/25984869385"
    }
  ]
}